0.1 Clustering

We will select resolution 0.3

Recheck quality of clusters

CD45 expression (immune cells)

0.2 Known marker genes

0.3 Preliminary annotation

0.4 Top markers

0.5 Cell composition

1 High-res annotation

1.1 TCR/BCR

Explore the TCR and BCR repertoires captured (if available).

## [1] "Percentage of T cells that have a TCR (TRUE) and don't have one (FALSE)."
## [1] "Percentage of B cells that have a BCR (TRUE) and don't have one (FALSE)."

1.2 DLBCL signatures

Schmitz et al. signatures

Relevant genes/mutations for this patient:

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